rs108898109 SNP Detail

Summary

• ID
  rs108898109
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84491321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCAGCCAA CACAGGGATG
  CATCTTATTA CCAAAGGGAA CAGCTAACAA ATGCCCTTGA CAGCCAAATA ATTACTTTCA
  GTTGAAAACA AACACAGGTA CAAGTGGATG CAGGCTCTAT CCAGAACTGC CAGCTCCCCA
  CCTCCTGAAC ACACCCCTTC CCAGACTTGC CCCGGCCAGG AGACCTAGTT TAAAAACAAA
  M
  AACCCCCCCC CCCAACCATT ACTCAAAGAG TTTTTTTCCA AAAAATTTTA TTGGGGGAAA
  CTACAAAACA TTTACAGTAC AATGTTTACA GTCACAATTT GTAGTGAACT GATTCCCCAA
  AATATATTAC AACTCAAGTT GACTTAATCT TGTTACATTC AAAAACCTAC TTCTGTCAAA
  GTAGTCCAGA GTGCACACGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss131326208	NCBIM37_NT_039649_chr17_84583233	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108898109					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131326208	NCBIM37_NT_039649_chr17_84583233	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84491321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	1705 bp proximal
Gm41640	predicted gene, 41640	962 bp upstream
Gm64687	predicted gene, 64687	922 bp downstream
Rr1582	regulatory region 1582	93 bp downstream
Rr405495	regulatory region 405495	1989 bp downstream
Rr406980	regulatory region 406980	1870 bp distal
Rr532021	regulatory region 532021	1503 bp distal
Rr532022	regulatory region 532022	1682 bp distal
Rr532023	regulatory region 532023	505 bp distal
Rr532024	regulatory region 532024	883 bp distal
Rr532025	regulatory region 532025	129 bp proximal
Rr532026	regulatory region 532026	1372 bp proximal
Tssr146040	transcription start site region 146040	1930 bp downstream
Tssr146041	transcription start site region 146041	1892 bp downstream
Tssr146042	transcription start site region 146042	1879 bp downstream
Tssr146043	transcription start site region 146043	121 bp downstream
Tssr146044	transcription start site region 146044	1853 bp upstream
Tssr149649	transcription start site region 149649	301 bp upstream
Tssr149650	transcription start site region 149650	1671 bp downstream
Tssr149651	transcription start site region 149651	1709 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	38 bp downstream