rs108899878 SNP Detail

Summary

• ID
  rs108899878
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:13775782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGAGTGT GCCTGTCTCC
  TGAGAGCAAC CTCACTGGAG GGCTGCTAGC TTACAGAGTC CCCGTGTCAG AGCCACTTCT
  GTCCTGTGGC CAGTGAACCC TCACTGGGCT GGTGAGGTGA GTTAGGTGTG GCCTTAGTAT
  CAAGGGTGGA GACATTCTGC CTGGGTTTCC CAGAGCATGG CCAGGCGCCT AAGCTGTCAT
  A
  TGATCACTTT GGATGTGTGT AAGAGAAAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGC
  GCACATGATA TTTATTTCTA AAATGCACCA GCTGCTTCAA AAAGCATGTG GAATGGGACG
  GCTGGGCTCT CATGCGCTTC AAATATTGAA CTAGGCTGGC CTCCCACTCC TCTGAAGGAA
  TAGGAGCAAC TGCATTTCTT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145197248	ENSMUSSNP7196398	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs108899878					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:13775782 () rs orientation: forward

Symbol	Name	Function Class
2700054A10Rik	RIKEN cDNA 2700054A10 gene	1426 bp upstream
Gm49936	predicted gene, 49936	within coordinates
Rr392310	regulatory region 392310	385 bp upstream
Rr522380	regulatory region 522380	within coordinates
Rr522381	regulatory region 522381	859 bp proximal