rs108902693 SNP Detail

Summary

• ID
  rs108902693
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172115825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTGGTT TAGTCTTAAG
  ATTTTCTTGA GCCAGCAAGA TGGTTCAGTG TGTAAGGGCT CCTACCTGCC AATCCTGTTG
  ACCTGAGTTG GATTCCTAGA ACCCACGTGG TAGACAGAGA AGCAAGGTCT GCAGGTCCTC
  CTCCACATGT GCACTGTGGT ATGAGTGTGC TCACTTACAC ACACACACAC ACACACACGC
  G
  CACACACACA TTCACACACA GACAATTATG AAATATTTTT TAATTAAAAA AACAAGATCT
  TCTCAATGTA GAATAAAATA ATCTTTTATT CTACATATTT TTATCTATAT ATTCATTCTA
  TATATTTATA ATCTGTAAAA TAAGATTGTG ATTATCTAAA ATATGTGACA TTGCAGGGGT
  CTTTGGGAAA GAATGTGTGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss146186657	ENSMUSSNP5415275	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs108902693					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172115825 () rs orientation: forward

Symbol	Name	Function Class
Atp1a2	ATPase, Na+/K+ transporting, alpha 2 polypeptide	within coordinates
Gm39704	predicted gene, 39704	within coordinates
Gm57554	predicted gene, 57554	within coordinates
Tssr15205	transcription start site region 15205	1129 bp downstream