rs108906737 SNP Detail

Summary

• ID
  rs108906737
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72776402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTCT GCCCTGGACA CCGCATGCGA
  Y
  CTGGGCTGCT ATCTTCAGGG TGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144619241	ENSMUSSNP3875975	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs108906737					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72776402 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5831	CpG island 5831	within coordinates
Gm20554	predicted gene, 20554	within coordinates
Irx2	Iroquois homeobox 2	537 bp upstream
Rr273617	regulatory region 273617	602 bp distal
Rr281620	regulatory region 281620	within coordinates
Tssr120305	transcription start site region 120305	503 bp upstream
Tssr120306	transcription start site region 120306	519 bp upstream
Tssr120307	transcription start site region 120307	548 bp upstream
Tssr123170	transcription start site region 123170	202 bp downstream
Tssr123171	transcription start site region 123171	280 bp downstream
Tssr123172	transcription start site region 123172	307 bp downstream