rs108910264 SNP Detail

Summary

• ID
  rs108910264
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122525283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTAAAGCC TCAATTACAA TGCTAACTGT AAAATTAGAT
  ATTCTGAGGC CCCAAAAGAC TTTTTCAAGT TAGGACATTA TGTGTGTGCT GTGTGCATGT
  M
  CGTGTGTGTG TGTGTGTGTA TGTGTATGTG TGTGTGTTAA GAGTGCAATT TGGAAGATGA
  AAGTGTAAAA TGCTTTAAAA TAATTCAGGC CTTCATATT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135748537	ENSMUSSNP3945680	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320914181	CHEV_3_122434552	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs108910264					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122525283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	699 bp distal
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Rr584395	regulatory region 584395	310 bp distal
Rr584396	regulatory region 584396	1151 bp distal
Tssr31514	transcription start site region 31514	1899 bp downstream
Tssr31515	transcription start site region 31515	1765 bp downstream
Tssr31516	transcription start site region 31516	1740 bp downstream
Tssr31517	transcription start site region 31517	1705 bp downstream
Tssr31518	transcription start site region 31518	1577 bp downstream
Tssr31519	transcription start site region 31519	1515 bp downstream
Tssr31520	transcription start site region 31520	1481 bp downstream
Tssr31521	transcription start site region 31521	1395 bp downstream
Tssr31522	transcription start site region 31522	1373 bp downstream