rs108911944 SNP Detail

Summary

• ID
  rs108911944
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:9616440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAGATGCAGA TGCCCAGCTC AGCCGGCCTG CACCCTACTG
  GACACCAGAG TAAGGAAGAG CTGGGCCGCG CCATGCAAGT GGCCAAGGTT TCCACCGCTT
  C
  GGTGGGACGC TTCCAGGAGC GCCTTCCCAA GGAGAAAGCT CCCCGGGGCT CCGGCAAGAA
  GAGGAAGTTT CAGCCCCTCT TTGGGGACTT CGCAGCCGAG A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss148565729	ENSMUSSNP4166522	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs108911944					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:9616440 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adhfe1	alcohol dehydrogenase, iron containing, 1			1733 bp upstream
Cpgi23	CpG island 23			within coordinates
Rr395961	regulatory region 395961			819 bp downstream
Rr407596	regulatory region 407596			1017 bp distal
Rr407597	regulatory region 407597			797 bp distal
Rr407598	regulatory region 407598			861 bp distal
Rr407599	regulatory region 407599			633 bp distal
Rr407600	regulatory region 407600			within coordinates
Rr407601	regulatory region 407601			55 bp distal
Rr407602	regulatory region 407602			1306 bp proximal
Rr407603	regulatory region 407603			1744 bp proximal
Rrs1	ribosome biogenesis regulator 1			Coding-NonSynonymous
				Coding-NonSynonymous
Tssr5894	transcription start site region 5894			827 bp downstream
Tssr5895	transcription start site region 5895			736 bp downstream
Tssr5896	transcription start site region 5896			720 bp downstream
Tssr5897	transcription start site region 5897			227 bp downstream
Tssr5898	transcription start site region 5898			1834 bp upstream
Tssr5899	transcription start site region 5899			1899 bp upstream