rs108913217 SNP Detail

Summary

• ID
  rs108913217
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:73075221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACG GTAGTGGTGT GGCTGGGGAT
  R
  GGGTAGGTCC TGAGGGGACA GGGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145171449	ENSMUSSNP689808	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322708341	CHEV_8_74845276	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs108913217					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:73075221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20584	CpG island 20584	346 bp distal
Klf2	Kruppel-like transcription factor 2 (lung)	within coordinates
Rr382266	regulatory region 382266	519 bp upstream
Tssr77971	transcription start site region 77971	1806 bp downstream
Tssr77972	transcription start site region 77972	1770 bp downstream
Tssr77973	transcription start site region 77973	1743 bp downstream
Tssr77974	transcription start site region 77974	1678 bp downstream
Tssr77975	transcription start site region 77975	1500 bp downstream
Tssr77976	transcription start site region 77976	1276 bp downstream
Tssr77977	transcription start site region 77977	1394 bp upstream
Tssr81779	transcription start site region 81779	1147 bp downstream