rs108914460 SNP Detail

Summary

• ID
  rs108914460
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94841436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA GCCACCTCCC CCCCCCCCTT
  W
  AGCCTACCAT GCTGCTTCCC CCATG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132650928	ENSMUSSNP3261910	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs108914460					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94841436 () rs orientation: forward

Symbol	Name	Function Class
Col1a1	collagen, type I, alpha 1	within coordinates
Rr454892	regulatory region 454892	1446 bp proximal
Tssr3647	transcription start site region 3647	1371 bp upstream
Tssr104259	transcription start site region 104259	1877 bp downstream
Tssr104260	transcription start site region 104260	1825 bp downstream
Tssr104261	transcription start site region 104261	1176 bp downstream
Tssr104262	transcription start site region 104262	436 bp downstream
Tssr104263	transcription start site region 104263	303 bp downstream
Tssr104264	transcription start site region 104264	281 bp downstream
Tssr104265	transcription start site region 104265	255 bp downstream
Tssr104266	transcription start site region 104266	243 bp downstream
Tssr104267	transcription start site region 104267	176 bp downstream
Tssr104268	transcription start site region 104268	148 bp downstream
Tssr104269	transcription start site region 104269	135 bp downstream
Tssr104270	transcription start site region 104270	114 bp downstream
Tssr104271	transcription start site region 104271	60 bp downstream
Tssr104272	transcription start site region 104272	93 bp upstream
Tssr104273	transcription start site region 104273	139 bp upstream
Tssr104274	transcription start site region 104274	239 bp upstream
Tssr104275	transcription start site region 104275	251 bp upstream
Tssr104276	transcription start site region 104276	261 bp upstream
Tssr104277	transcription start site region 104277	495 bp upstream
Tssr104278	transcription start site region 104278	547 bp upstream
Tssr104279	transcription start site region 104279	564 bp upstream
Tssr104280	transcription start site region 104280	619 bp upstream
Tssr104281	transcription start site region 104281	633 bp upstream
Tssr104282	transcription start site region 104282	679 bp upstream
Tssr104283	transcription start site region 104283	851 bp upstream
Tssr104284	transcription start site region 104284	876 bp upstream
Tssr104285	transcription start site region 104285	945 bp upstream
Tssr104286	transcription start site region 104286	967 bp upstream
Tssr104287	transcription start site region 104287	994 bp upstream
Tssr104288	transcription start site region 104288	1016 bp upstream
Tssr104289	transcription start site region 104289	1057 bp upstream
Tssr104290	transcription start site region 104290	1103 bp upstream
Tssr104291	transcription start site region 104291	1112 bp upstream
Tssr104292	transcription start site region 104292	1150 bp upstream
Tssr104293	transcription start site region 104293	1298 bp upstream
Tssr104294	transcription start site region 104294	1335 bp upstream
Tssr104295	transcription start site region 104295	1393 bp upstream
Tssr104296	transcription start site region 104296	1412 bp upstream
Tssr104297	transcription start site region 104297	1445 bp upstream
Tssr104298	transcription start site region 104298	1483 bp upstream
Tssr104299	transcription start site region 104299	1511 bp upstream
Tssr104300	transcription start site region 104300	1531 bp upstream
Tssr104301	transcription start site region 104301	1655 bp upstream
Tssr104302	transcription start site region 104302	1667 bp upstream
Tssr104303	transcription start site region 104303	1681 bp upstream
Tssr104304	transcription start site region 104304	1720 bp upstream
Tssr104305	transcription start site region 104305	1745 bp upstream
Tssr104306	transcription start site region 104306	1760 bp upstream
Tssr104307	transcription start site region 104307	1776 bp upstream
Tssr104308	transcription start site region 104308	1846 bp upstream
Tssr104309	transcription start site region 104309	1866 bp upstream
Tssr104310	transcription start site region 104310	1911 bp upstream
Tssr110222	transcription start site region 110222	232 bp downstream
Tssr110223	transcription start site region 110223	601 bp downstream
Tssr110224	transcription start site region 110224	686 bp downstream
Tssr110225	transcription start site region 110225	899 bp downstream
Tssr110226	transcription start site region 110226	932 bp downstream
Tssr110227	transcription start site region 110227	971 bp downstream
Tssr110228	transcription start site region 110228	983 bp downstream
Tssr110229	transcription start site region 110229	1043 bp downstream
Tssr110230	transcription start site region 110230	1074 bp downstream