rs108920076 SNP Detail

Summary

• ID
  rs108920076
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32430053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGACAGAAG TCCCTTTGCT
  TCCCAACCCG GATGGAGACG TCTCCAGAAC CTGGAGGGAC ACGTGCGTTT TCTCCCTCTC
  GGACTCTACC TCACCGGTCT GGAAGACCTC CGAAGACTTA CAAATTTTTT TCTCCAAAGG
  AATTTTGTTT TCGTGCTTGT GTAATACAGC CAGAATTTTA CTTGCTCCTG ATTCCCCTTC
  Y
  GTTTTCTTTT TGACTGTCAG CCCCACTTTC TGGACAGAAG ATCGACTATG TTTCCTGGTG
  AAGTGCTGGT GTACGCTCAG GGTATTCTGA AGGCCACTCG TTTTCTAATT TTTACTGGAT
  TCCAAAGCTT TGATCAAGGT CGTCTTTTAA GAGTTTCAAG CTTATGACTG TTAATGTAAG
  GATTTGTATG GCTTTGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385510092	MGP_WTSI_12_33064919	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108920076					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385510092	MGP_WTSI_12_33064919	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32430053 () rs orientation: forward

Symbol	Name	Function Class
Ccdc71l	coiled-coil domain containing 71 like	within coordinates
Cpgi4541	CpG island 4541	79 bp distal
Rr403262	regulatory region 403262	1294 bp downstream
Tssr113128	transcription start site region 113128	1347 bp downstream
Tssr113129	transcription start site region 113129	1240 bp downstream
Tssr113130	transcription start site region 113130	1159 bp downstream
Tssr113131	transcription start site region 113131	1125 bp downstream
Tssr113132	transcription start site region 113132	953 bp downstream
Tssr113133	transcription start site region 113133	876 bp downstream
Tssr113134	transcription start site region 113134	820 bp downstream
Tssr113135	transcription start site region 113135	298 bp downstream
Tssr113136	transcription start site region 113136	114 bp downstream