rs108923839 SNP Detail

Summary

• ID
  rs108923839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44130175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCC TCCCCCTTTT CTTCTTCCAC
  Y
  AGATCTCTCC TTCACTCCTA CCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss149112911	ENSMUSSNP1426939	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322198945	CHEV_7_51736121	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs108923839					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44130175 () rs orientation: forward

Symbol	Name	Function Class
Rr646103	regulatory region 646103	1833 bp proximal
Tssr2227	transcription start site region 2227	1731 bp downstream
Tssr2228	transcription start site region 2228	668 bp downstream
Tssr2229	transcription start site region 2229	393 bp downstream
Tssr2230	transcription start site region 2230	210 bp downstream
Tssr2231	transcription start site region 2231	83 bp downstream
Tssr2232	transcription start site region 2232	90 bp upstream
Tssr2233	transcription start site region 2233	123 bp upstream
Tssr2234	transcription start site region 2234	282 bp upstream
Tssr2235	transcription start site region 2235	916 bp upstream
Tssr66289	transcription start site region 66289	1923 bp downstream
Tssr66290	transcription start site region 66290	1885 bp downstream
Tssr66291	transcription start site region 66291	1859 bp downstream
Tssr66292	transcription start site region 66292	1827 bp downstream
Tssr66293	transcription start site region 66293	1805 bp downstream
Tssr66294	transcription start site region 66294	1781 bp downstream
Tssr66295	transcription start site region 66295	1516 bp downstream
Tssr66296	transcription start site region 66296	1345 bp downstream
Tssr66297	transcription start site region 66297	1321 bp downstream
Tssr66298	transcription start site region 66298	1266 bp downstream
Tssr66299	transcription start site region 66299	1246 bp downstream
Tssr66300	transcription start site region 66300	1223 bp downstream
Tssr66301	transcription start site region 66301	1207 bp downstream
Tssr66302	transcription start site region 66302	1166 bp downstream
Tssr66303	transcription start site region 66303	1157 bp downstream
Tssr66304	transcription start site region 66304	1152 bp downstream
Tssr66305	transcription start site region 66305	1113 bp downstream
Tssr66306	transcription start site region 66306	1059 bp downstream
Tssr66307	transcription start site region 66307	1010 bp downstream
Tssr66308	transcription start site region 66308	993 bp downstream
Tssr66309	transcription start site region 66309	943 bp downstream
Tssr66310	transcription start site region 66310	874 bp downstream
Tssr66311	transcription start site region 66311	851 bp downstream
Tssr66312	transcription start site region 66312	832 bp downstream
Tssr66313	transcription start site region 66313	822 bp downstream
Tssr66314	transcription start site region 66314	804 bp downstream
Tssr66315	transcription start site region 66315	797 bp downstream
Tssr66316	transcription start site region 66316	732 bp downstream
Tssr66317	transcription start site region 66317	716 bp downstream
Tssr66318	transcription start site region 66318	675 bp downstream
Tssr66319	transcription start site region 66319	647 bp downstream
Tssr66320	transcription start site region 66320	623 bp downstream
Tssr66321	transcription start site region 66321	599 bp downstream
Tssr66322	transcription start site region 66322	583 bp downstream
Tssr66323	transcription start site region 66323	545 bp downstream
Tssr66324	transcription start site region 66324	492 bp downstream
Tssr66325	transcription start site region 66325	451 bp downstream
Tssr66326	transcription start site region 66326	441 bp downstream
Tssr66327	transcription start site region 66327	421 bp downstream
Tssr66328	transcription start site region 66328	403 bp downstream
Tssr66329	transcription start site region 66329	364 bp downstream
Tssr66330	transcription start site region 66330	351 bp downstream
Tssr66331	transcription start site region 66331	337 bp downstream
Tssr66332	transcription start site region 66332	304 bp downstream
Tssr66333	transcription start site region 66333	269 bp downstream
Tssr66334	transcription start site region 66334	263 bp downstream
Tssr66335	transcription start site region 66335	252 bp downstream
Tssr66336	transcription start site region 66336	238 bp downstream
Tssr66337	transcription start site region 66337	222 bp downstream
Tssr66338	transcription start site region 66338	138 bp downstream
Tssr66339	transcription start site region 66339	106 bp downstream
Tssr66340	transcription start site region 66340	39 bp downstream
Tssr66341	transcription start site region 66341	within coordinates
Tssr66342	transcription start site region 66342	28 bp upstream
Tssr66343	transcription start site region 66343	60 bp upstream
Tssr66344	transcription start site region 66344	205 bp upstream
Tssr66345	transcription start site region 66345	238 bp upstream
Tssr66346	transcription start site region 66346	294 bp upstream
Tssr66347	transcription start site region 66347	332 bp upstream
Tssr66348	transcription start site region 66348	373 bp upstream
Tssr66349	transcription start site region 66349	397 bp upstream
Tssr66350	transcription start site region 66350	425 bp upstream
Tssr66351	transcription start site region 66351	433 bp upstream
Tssr66352	transcription start site region 66352	469 bp upstream
Tssr66353	transcription start site region 66353	543 bp upstream
Tssr66354	transcription start site region 66354	557 bp upstream
Tssr66355	transcription start site region 66355	584 bp upstream
Tssr66356	transcription start site region 66356	601 bp upstream
Tssr66357	transcription start site region 66357	615 bp upstream
Tssr66358	transcription start site region 66358	627 bp upstream
Tssr66359	transcription start site region 66359	653 bp upstream
Tssr66360	transcription start site region 66360	665 bp upstream
Tssr66361	transcription start site region 66361	691 bp upstream
Tssr66362	transcription start site region 66362	723 bp upstream
Tssr66363	transcription start site region 66363	740 bp upstream
Tssr66364	transcription start site region 66364	773 bp upstream
Tssr66365	transcription start site region 66365	793 bp upstream
Tssr66366	transcription start site region 66366	813 bp upstream
Tssr66367	transcription start site region 66367	841 bp upstream
Tssr66368	transcription start site region 66368	863 bp upstream
Tssr66369	transcription start site region 66369	897 bp upstream
Tssr66370	transcription start site region 66370	939 bp upstream
Tssr66371	transcription start site region 66371	1364 bp upstream
Tssr66372	transcription start site region 66372	1527 bp upstream
Tssr66373	transcription start site region 66373	1817 bp upstream
Tssr66374	transcription start site region 66374	1875 bp upstream
Tssr66375	transcription start site region 66375	1886 bp upstream
Tssr66376	transcription start site region 66376	1899 bp upstream
Tssr66377	transcription start site region 66377	1938 bp upstream
Tssr66378	transcription start site region 66378	1960 bp upstream
Tssr66379	transcription start site region 66379	1972 bp upstream
Tssr72201	transcription start site region 72201	1800 bp upstream
Tssr72202	transcription start site region 72202	943 bp upstream
Tssr72203	transcription start site region 72203	563 bp upstream
Tssr72204	transcription start site region 72204	24 bp downstream