rs108925272 SNP Detail

Summary

• ID
  rs108925272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172039172 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCAAAATGT TCAAAATCTA CTAGAAGAGA TAGGATGCTC
  CAAGGCAAGT TCTCTATGCC AGTGAGCTCT CAGGGGCGGG GGTGGGGGTG GGGGTGGGCA
  Y
  AGGGGAAATA CTTGAAAGAA AACACAGTGG AGGACCATAA GGTTGGACTG GACTCTGAAG
  AATGGGCAGG TGGATCCTGT GAGTGGATGA TGCACGTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007464	PARCsnp_1.17810	PARC_SEQ	INBRED	f	SNP	T	C
ss120010371	PARCsnp_1.07453	PARC_SEQ	INBRED	f	SNP	T	C
ss320123257	CHEV_1_174141736	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs108925272					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172039172 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	1260 bp downstream
Tssr15168	transcription start site region 15168	1479 bp upstream
Tssr15169	transcription start site region 15169	1401 bp upstream
Tssr15170	transcription start site region 15170	1379 bp upstream
Tssr15171	transcription start site region 15171	1361 bp upstream
Tssr15172	transcription start site region 15172	1280 bp upstream
Tssr15173	transcription start site region 15173	1186 bp upstream
Tssr15174	transcription start site region 15174	1132 bp upstream
Tssr15175	transcription start site region 15175	378 bp downstream
Tssr15176	transcription start site region 15176	1459 bp downstream
Tssr15177	transcription start site region 15177	1513 bp downstream
Tssr15178	transcription start site region 15178	1537 bp downstream
Tssr15179	transcription start site region 15179	1559 bp downstream
Tssr15180	transcription start site region 15180	1764 bp downstream