rs108931049 SNP Detail

Summary

• ID
  rs108931049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156713714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCATTGCGT TGAGACCCCT GCCCGGTGCT TTAAATGGTT
  TTTGTTGTTG TTGTTGCTTT GGTTTGGTTT TTTTTTTGAG ACAGGGTTTC TCTGTGTAGC
  Y
  CTGGCTGTCC TGGAACTCAC TTTGTAGACC AGGCTGGCCT CGAACTCAGA AATCCGTATG
  CCTCTGCCTC CCGAGTGCTG GGATCAAAGG CGTGCGCCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148084846	ENSMUSSNP4149731	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs108931049					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156713714 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab5if	RAB5 interacting factor			Intron
				Noncoding-Transcript-Variant
Rr568377	regulatory region 568377			935 bp distal
Rr568378	regulatory region 568378			1776 bp proximal
Tssr21217	transcription start site region 21217			704 bp upstream