rs108932736 SNP Detail

Summary

• ID
  rs108932736
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113876704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTTCAA AATGGCAGAA
  GTACAGTGAG GGCCATTTTG GAAATTTCTG TAAATCCTGT TCTAGTCTCA GGCCAAATAT
  TCTTCCTTTA ATACCTTTTA ATAATATAAC TGAAATCAGC AGCTCAGGCA ACAACTTTAA
  AAGTCAAAAT TCTAACATAA TACTGACTAA CAATGTACTA ACTTGATACT CACATGCTGA
  R
  AACAGTAAAA AAAAAAATAC TAAATTGCGT TTGAAAATGA ACAGGGAACT TTGTACACTA
  CATGCAGAGA ACACAGGAGC CTTGAATCTG AGCTGTTCCA GGCAGGGTTT GTTGCTGTCC
  CATGGTGTGA CATAATGCTG CATGTGAAAT ACACGCATGT ACTCAAAACC AGTGTTGCAG
  TGAAGTCATG TGATACAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147245716	ENSMUSSNP4622652	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs108932736					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113876704 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	1059 bp downstream
Rr562815	regulatory region 562815	513 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	1339 bp downstream
Tssr601	transcription start site region 601	1349 bp downstream
Tssr19429	transcription start site region 19429	1061 bp upstream
Tssr19430	transcription start site region 19430	1156 bp upstream
Tssr19431	transcription start site region 19431	1236 bp upstream
Tssr19432	transcription start site region 19432	1332 bp upstream
Tssr19433	transcription start site region 19433	1898 bp upstream
Tssr19434	transcription start site region 19434	1951 bp upstream
Tssr25660	transcription start site region 25660	1088 bp downstream
Tssr25661	transcription start site region 25661	1105 bp downstream
Tssr25662	transcription start site region 25662	1162 bp downstream
Tssr25663	transcription start site region 25663	1225 bp downstream
Tssr25664	transcription start site region 25664	1255 bp downstream
Tssr25665	transcription start site region 25665	1363 bp downstream
Tssr25666	transcription start site region 25666	1930 bp downstream
Tssr25667	transcription start site region 25667	1957 bp downstream
Tssr25668	transcription start site region 25668	1993 bp downstream