rs108934606 SNP Detail

Summary

• ID
  rs108934606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72183043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGT GTTTTCACGA CCAACCTGCA
  Y
  TTGTAACCCG TTAGGAAAGA AATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136620093	ENSMUSSNP2642445	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss323002098	CHEV_9_72123568	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs108934606					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72183043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22014	CpG island 22014	29 bp distal
Gm27253	predicted gene 27253	905 bp upstream
Rr197186	regulatory region 197186	1443 bp distal
Rr206702	regulatory region 206702	within coordinates
Rr368823	regulatory region 368823	219 bp downstream
Tssr85968	transcription start site region 85968	875 bp downstream
Tssr85969	transcription start site region 85969	848 bp downstream
Tssr85970	transcription start site region 85970	811 bp downstream
Tssr85971	transcription start site region 85971	748 bp downstream
Tssr85972	transcription start site region 85972	735 bp downstream
Tssr85973	transcription start site region 85973	262 bp downstream
Zfp280d	zinc finger protein 280D	within coordinates