rs108935036 SNP Detail

Summary

• ID
  rs108935036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32876878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGCCTT CCAAAGAGAT
  GCATGGCAGT TGAGAGTTGA GTCTTAGGGT CACCTCCAAA AGAAGAGTTT GACCTCTGGG
  GAACACAAAA TAAAACACAT GTCAGCAAGC TCCAGCATCC TCACCTCTTC ATGGCCACGT
  TGTTGAGGAG TGTGAGGCCC AGATGGTCAG CTCAGTTGCT CAAGGTCATA GGACTGGTGA
  R
  TGGCAGAGCC TCACTTTGTC TGGGGCTCTC TGATGCCAAG CCTGAGCTTT CATTAAAGGC
  TGCTGAGGGT TAGGGGATGC ACAAGGGATG GTTGAAGTTA GCATATTCCT GATGTGTAGC
  AAAGGAACTA AGACTCTTAC CTCTGCCTGG TTATGTCTTC ATTCTTTCAC AAAAGTAATG
  GAAAGCACAG TCTAAGTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398036781	MGP_WTSI_17_32794849	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs108935036					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	G	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398036781	MGP_WTSI_17_32794849	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32876878 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	996 bp upstream
Gm65897	predicted gene, 65897	within coordinates
Rr525786	regulatory region 525786	224 bp proximal
Rr525787	regulatory region 525787	767 bp proximal
Rr525788	regulatory region 525788	1007 bp proximal
Tssr143725	transcription start site region 143725	974 bp upstream
Tssr143726	transcription start site region 143726	1062 bp upstream
Tssr143727	transcription start site region 143727	1085 bp upstream
Tssr143728	transcription start site region 143728	1105 bp upstream
Tssr143729	transcription start site region 143729	1117 bp upstream
Tssr143730	transcription start site region 143730	1140 bp upstream
Tssr143731	transcription start site region 143731	1162 bp upstream
Tssr143732	transcription start site region 143732	1176 bp upstream