rs108935221 SNP Detail

Summary

• ID
  rs108935221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  132
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73142240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGCACTG TACTTTCTTT
  CCTGGAATAC ATGTGTACCT TGATTTAAGA CAGTGTCAGT CACTGTAGCA ATTCCTGATG
  CTCTTGCCTC GGCTTTCCAG AGTGTCATGA CAATAGCTAT AGACCAGTGT ACACAGCTCT
  AAGTTTAACA GTCTTGTATT AAATAAAAAT AAAGGGATTA TAAGAATCTC CCAATATACC
  Y
  CAAAATGCTT TTTTTCCTCC AGCAAAATTC TCTTTAATCT AAACATAGTC TTTTATCTTT
  GATGGTCAGA GTAGCTTTTT GTTTTGTTTT GTTTTCTCGA GACACTATGT AGCTTTGGTT
  GTCCTGAAAC TCACTCTAGA CTAAAGGCAT GTTCTACAAA ACCAGGCCAC AGTAACTCTT
  TATTTTATAA ATGAATGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss131135722	NCBIM37_NT_039649_chr17_73184585	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs108935221					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss131135722	NCBIM37_NT_039649_chr17_73184585	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73142240 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9486	CpG island 9486	872 bp proximal
Rr335920	regulatory region 335920	240 bp distal
Rr340175	regulatory region 340175	560 bp proximal
Rr405431	regulatory region 405431	1010 bp upstream
Tssr5197	transcription start site region 5197	899 bp downstream
Tssr145775	transcription start site region 145775	1411 bp upstream
Tssr145776	transcription start site region 145776	1433 bp upstream
Tssr145777	transcription start site region 145777	1479 bp upstream
Ypel5	yippee like 5	1383 bp upstream