rs13459049 SNP Detail

Summary

• ID
  rs13459049
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4540674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGT TTCAAATAAG TGAACTCAAC
  M
  TAAATTAAAA ACCAAAAACC CCTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45971758	mCV27578166	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss132932209	ENSMUSSNP6566124	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss321727607	CHEV_6_4490674	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13459049					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4540674 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr54731	transcription start site region 54731	1984 bp downstream
Tssr54732	transcription start site region 54732	1897 bp downstream
Tssr54733	transcription start site region 54733	1200 bp downstream
Tssr54734	transcription start site region 54734	1183 bp downstream
Tssr54735	transcription start site region 54735	1172 bp downstream
Tssr54736	transcription start site region 54736	1146 bp downstream
Tssr54737	transcription start site region 54737	1129 bp downstream
Tssr54738	transcription start site region 54738	1086 bp downstream
Tssr54739	transcription start site region 54739	1074 bp downstream
Tssr54740	transcription start site region 54740	997 bp downstream
Tssr54741	transcription start site region 54741	658 bp downstream
Tssr54742	transcription start site region 54742	132 bp downstream
Tssr54743	transcription start site region 54743	101 bp downstream
Tssr54744	transcription start site region 54744	89 bp downstream
Tssr54745	transcription start site region 54745	83 bp downstream
Tssr54746	transcription start site region 54746	54 bp downstream
Tssr54747	transcription start site region 54747	3 bp downstream
Tssr54748	transcription start site region 54748	within coordinates
Tssr54749	transcription start site region 54749	169 bp upstream
Tssr54750	transcription start site region 54750	182 bp upstream
Tssr54751	transcription start site region 54751	190 bp upstream
Tssr54752	transcription start site region 54752	233 bp upstream
Tssr54753	transcription start site region 54753	255 bp upstream
Tssr54754	transcription start site region 54754	364 bp upstream
Tssr54755	transcription start site region 54755	763 bp upstream
Tssr59718	transcription start site region 59718	47 bp downstream
Tssr59719	transcription start site region 59719	115 bp downstream