rs13459114 SNP Detail

Summary

• ID
  rs13459114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121744977 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTGGG TACCAGTCTG TAGATGGGGA
  Y
  CACAGGATGA TCCACTTAGC TAGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16378822	09.122.205	TWGNF	TWGNF-Mouse-2	r	SNP	A	A	G	G	G	A	G	G	A	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A	G	A	G	G	G	G	A	A	A	G	G	A	G	A	G	G	A	G	G	G	A	G	G
ss46352152	mCV23339838	ABI	CRAMUS_MOUSE	r	SNP	A	A	G						A											G
ss137070859	ENSMUSSNP4932059	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	G																	G
ss323232582	CHEV_9_121825029	CHEVERUD	SCREENING_POP	r	SNP																										G																	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13459114					SNP	T	T	C	C	C	T	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C	C	C	T	T	T	C	C	T	C	T	C	C	T	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121744977 () rs orientation: reverse

Symbol	Name	Function Class
Cyp8b1	cytochrome P450, family 8, subfamily b, polypeptide 1	within coordinates
Rr689114	regulatory region 689114	384 bp proximal
Tssr92081	transcription start site region 92081	1210 bp upstream
Tssr92082	transcription start site region 92082	1047 bp upstream
Tssr92083	transcription start site region 92083	727 bp upstream
Tssr92084	transcription start site region 92084	377 bp downstream