rs13459176 SNP Detail

Summary

• ID
  rs13459176
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3308612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACGTAATTT TTTCATGCGT TCATGATAAT TCTATAAGCA
  TGTTAACAAG TGGGTTTATA AATTTGTTCC AGAGTCTTGA AGATGAAGAC TTCTGTAAAA
  M
  TGTGACCTCA GCTACTGCCA ATAAAACTGC GGAGCCCTCA GAGGCTCATA GCCACCACAA
  ACACCACAAC AAACATGGGC AGGAGCATCT TGGCAGCAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16381323	15.003.105	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	C	A	C	A	C	C	C	C	C	A	A	C	A	C	C	A	A	A	A	C	C	A	A	C	A	C	A	A	A	C	C	A	A	C	C	A		C	C	A	C	A	A	C	C	A	A
ss39379816	mCV22292278	ABI	CRAMUS_MOUSE	f	SNP	A	A	C						C											A
ss62609626	NES17307815	PERLEGEN	MM_PANEL2	f	SNP	A		C		C	A		C							A					A					A					A					A				A									A
ss147034101	ENSMUSSNP4703802	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C																	A
ss324861155	CHEV_15_3229130	CHEVERUD	SCREENING_POP	f	SNP																										C																		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13459176					SNP	A	A	C	A	C	A	C	C	C	C	C	A	A	C	A	C	C	A	A	A	A	C	C	A	A	C	A	C	A	A	A	C	C	A	A	C	C	A	A	C	C	A	C	A	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609626	NES17307815	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3308612 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	940 bp downstream
Rr498565	regulatory region 498565	1519 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	127 bp upstream
Tssr130395	transcription start site region 130395	1935 bp downstream
Tssr130396	transcription start site region 130396	1898 bp downstream
Tssr130397	transcription start site region 130397	within coordinates
Tssr130398	transcription start site region 130398	27 bp upstream
Tssr130399	transcription start site region 130399	135 bp upstream
Tssr130400	transcription start site region 130400	155 bp upstream
Tssr130401	transcription start site region 130401	169 bp upstream
Tssr130402	transcription start site region 130402	237 bp upstream
Tssr130403	transcription start site region 130403	269 bp upstream
Tssr130404	transcription start site region 130404	309 bp upstream
Tssr130405	transcription start site region 130405	329 bp upstream
Tssr130406	transcription start site region 130406	360 bp upstream
Tssr130407	transcription start site region 130407	394 bp upstream
Tssr130408	transcription start site region 130408	430 bp upstream
Tssr130409	transcription start site region 130409	439 bp upstream
Tssr130410	transcription start site region 130410	460 bp upstream
Tssr130411	transcription start site region 130411	516 bp upstream
Tssr130412	transcription start site region 130412	591 bp upstream
Tssr130413	transcription start site region 130413	844 bp upstream
Tssr130414	transcription start site region 130414	892 bp upstream
Tssr130415	transcription start site region 130415	966 bp upstream
Tssr130416	transcription start site region 130416	1263 bp upstream
Tssr133563	transcription start site region 133563	59 bp downstream
Tssr133564	transcription start site region 133564	131 bp downstream
Tssr133565	transcription start site region 133565	179 bp downstream
Tssr133566	transcription start site region 133566	185 bp downstream
Tssr133567	transcription start site region 133567	432 bp downstream
Tssr133568	transcription start site region 133568	503 bp downstream