rs13459352 SNP Detail

Summary

• ID
  rs13459352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38106730 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCCTA GAGAGGCAGT ACAGATGGAT
  Y
  GAACACAATG GTGAGCAAGT CTTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39692046	mCV27587508	ABI	CRAMUS_MOUSE	r	SNP	G	A	G	A	G
ss146361599	ENSMUSSNP3838585	ENSEMBL	ENSEMBL_Sanger	r	SNP			G		G
ss325801293	CHEV_19_38192772	CHEVERUD	SCREENING_POP	r	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13459352					SNP	C	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38106730 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	942 bp proximal
Rbp4	retinol binding protein 4, plasma	Coding-Synonymous
Rr547239	regulatory region 547239	1631 bp proximal
Tssr156244	transcription start site region 156244	1520 bp downstream
Tssr156245	transcription start site region 156245	33 bp upstream
Tssr159111	transcription start site region 159111	1481 bp upstream
Tssr159112	transcription start site region 159112	1431 bp upstream
Tssr159113	transcription start site region 159113	1366 bp upstream
Tssr159114	transcription start site region 159114	25 bp downstream
Tssr159115	transcription start site region 159115	64 bp downstream
Tssr159116	transcription start site region 159116	100 bp downstream
Tssr159117	transcription start site region 159117	198 bp downstream