rs13459353 SNP Detail

Summary

• ID
  rs13459353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38106772 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGAG ACACGGAGGC TGGTGAGGCA
  R
  CGGCAGGAGG AGCTGTGCCT AGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39671815	mCV27587507	ABI	CRAMUS_MOUSE	r	SNP	T		T	C	T
ss146361602	ENSMUSSNP1699824	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	T		T
ss325801294	CHEV_19_38192814	CHEVERUD	SCREENING_POP	r	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13459353					SNP	A	G	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38106772 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	900 bp proximal
Rbp4	retinol binding protein 4, plasma	Coding-Synonymous
Rr547239	regulatory region 547239	1589 bp proximal
Tssr156244	transcription start site region 156244	1562 bp downstream
Tssr156245	transcription start site region 156245	within coordinates
Tssr159111	transcription start site region 159111	1523 bp upstream
Tssr159112	transcription start site region 159112	1473 bp upstream
Tssr159113	transcription start site region 159113	1408 bp upstream
Tssr159114	transcription start site region 159114	5 bp upstream
Tssr159115	transcription start site region 159115	22 bp downstream
Tssr159116	transcription start site region 159116	58 bp downstream
Tssr159117	transcription start site region 159117	156 bp downstream