rs13459392 SNP Detail

Summary

• ID
  rs13459392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48691314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCGGCGACCC TCGCATCAAC TGCAGCCATG ACCGAGCAGA TGACCCTTCG
  Y
  GGGACCCTTA AGGGCCACAA TGGATGGGTA ACACAGATCG CCACCACACC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219199	NES08451758	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13459392					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219199	NES08451758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48691314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	within coordinates
Gm25296	predicted gene, 25296	379 bp upstream
Gm36109	predicted gene, 36109	1084 bp upstream
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	within coordinates
Snord96a	small nucleolar RNA, C/D box 96A	1546 bp upstream
Tssr101138	transcription start site region 101138	416 bp downstream
Tssr101139	transcription start site region 101139	118 bp downstream
Tssr101140	transcription start site region 101140	94 bp downstream
Tssr101141	transcription start site region 101141	377 bp upstream
Tssr101142	transcription start site region 101142	1312 bp upstream
Tssr101143	transcription start site region 101143	1779 bp upstream
Tssr101144	transcription start site region 101144	1822 bp upstream
Tssr107634	transcription start site region 107634	1082 bp upstream
Tssr107635	transcription start site region 107635	482 bp upstream