rs13459393 SNP Detail

Summary

• ID
  rs13459393
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48692720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGATGAGAC CAACTATGGC
  ATACCACAGC GTGCTCTGAG AGGTCACTCC CACTTCGTTA GTGATGTTGT TATCTCCTCT
  GATGGTCAGT TTGCCCTCTC GGGCTCCTGG GACGGAACGC TGCGCCTCTG GGATCTCACA
  ACGCAAGTAG CTGCTTTGGA ATCTTGGGGG GAAAGTGGGC AGAACTGAGG TAGATTCGCC
  R
  GGGTGCAGTC TCCCCTTGGT AATTGGTCCT TTTGTAGAGG GTAAAGCAAC ATTTGGGGGT
  GTTGTTTTAA ACTGGGTACC TATGAAGTGT CTCATCTTGT ACGTTGTCTT AGATGGGCAT
  TTGGCAGATG TAATAGAGGA TCCTAGTGAT GACAAGACGA CATTGTCAAC CAATCCCCCA
  CAAGGGAATG AGGACATGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37219195	NES08451718	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13459393					SNP	G	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37219195	NES08451718	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48692720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2778	CpG island 2778	1011 bp distal
Gm25296	predicted gene, 25296	961 bp downstream
Rack1	receptor for activated C kinase 1	within coordinates
Rr246622	regulatory region 246622	within coordinates
Snord95	small nucleolar RNA, C/D box 95	1246 bp upstream
Snord96a	small nucleolar RNA, C/D box 96A	140 bp upstream
Tssr101138	transcription start site region 101138	1822 bp downstream
Tssr101139	transcription start site region 101139	1524 bp downstream
Tssr101140	transcription start site region 101140	1500 bp downstream
Tssr101141	transcription start site region 101141	1025 bp downstream
Tssr101142	transcription start site region 101142	84 bp downstream
Tssr101143	transcription start site region 101143	373 bp upstream
Tssr101144	transcription start site region 101144	416 bp upstream
Tssr101145	transcription start site region 101145	1529 bp upstream
Tssr107635	transcription start site region 107635	1888 bp upstream