rs13459526 SNP Detail

Summary

• ID
  rs13459526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58662228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGAATAAG GAGCCTGGAT TATTTCCCTG TGTGGTGTGT
  CTCTCCCATC AGAACATGTT CCGAGTGGAG AGTGTGAACT GCATCTGTGT GGACTGGAAA
  R
  GCGGTTCCCG AACGACATAT ACCCAGGCTA CCCAGAACGT CCGGGTCGTG GGGGCAGAAG
  TGGCATTGTT GGTTAACGTT CTGCAGGTAA CTGACTCTGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss50904029	NES13492708	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs13459526					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904029	NES13492708	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58662228 () rs orientation: forward

Symbol	Name	Function Class
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	773 bp proximal
Tssr5571	transcription start site region 5571	669 bp downstream
Tssr157265	transcription start site region 157265	1965 bp downstream
Tssr157266	transcription start site region 157266	711 bp downstream
Tssr157267	transcription start site region 157267	692 bp downstream
Tssr157268	transcription start site region 157268	638 bp downstream
Tssr157269	transcription start site region 157269	45 bp downstream
Tssr157270	transcription start site region 157270	8 bp upstream
Tssr157271	transcription start site region 157271	1260 bp upstream
Tssr157272	transcription start site region 157272	1271 bp upstream
Tssr159958	transcription start site region 159958	1930 bp upstream
Tssr159959	transcription start site region 159959	659 bp upstream
Tssr159960	transcription start site region 159960	611 bp upstream
Tssr159961	transcription start site region 159961	1352 bp downstream