rs13459658 SNP Detail

Summary

• ID
  rs13459658
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12569072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCTCGACG TCCGCGGGGG
  CGTCTGGGAG TTGTAGTCCG GACTCGTGAG CTGGCGCAGT TCGGGACAAG ACCGACGGGC
  GAGCGCCATT GTGTCTTTCC GCAATCGTAG CGCTGCGTGA AAGCCCGTCG GGGGCAGCAC
  CCATCTTCTG TTTTATTTGC AACCTCTGGA ACCCAGTGTC GGCTTCGTTT GTGGCGCCAC
  K
  TCTACGGACC CGGGAGAAGG TGTGTAGTCG TGGGTCCGAA CAAATCCTAA GGAAGACATC
  GCGTTCTAAA TAAGGACCAC AGTTTAAGAA AACCAACCGC CTTTTGGATT AGATGACATC
  AGCTGTCCCC TCTCGGTTAG AGGGGAACCT GTCTTGTAGG CTTATGGGAG TCGGGAAGAG
  GATTCACTGG GCACTTTGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51469411	NES13983790	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13459658					SNP	T	T	T	T	T	G	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51469411	NES13983790	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12569072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18318	CpG island 18318	within coordinates
Rr642383	regulatory region 642383	374 bp distal
Rr642384	regulatory region 642384	199 bp distal
Rr642385	regulatory region 642385	within coordinates
Rr642386	regulatory region 642386	349 bp proximal
Tssr64479	transcription start site region 64479	334 bp downstream
Tssr64480	transcription start site region 64480	93 bp downstream
Tssr64481	transcription start site region 64481	103 bp upstream
Tssr64482	transcription start site region 64482	805 bp upstream
Zfp110	zinc finger protein 110	within coordinates