rs13459663 SNP Detail

Summary

• ID
  rs13459663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122828141 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCTG TTTCAACCCC AAGACATTGC
  Y
  TCCATGGTCA TTCTTGGTCT CACTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918335635	MGP_WTSI_6_122851182	EVA_MGPV3	EVA_MGPV3	r	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13459663					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918335635	MGP_WTSI_6_122851182	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122828141 () rs orientation: reverse

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Rr142690	regulatory region 142690	1508 bp proximal
Tssr58711	transcription start site region 58711	673 bp downstream
Tssr58712	transcription start site region 58712	592 bp downstream
Tssr58713	transcription start site region 58713	524 bp downstream
Tssr58714	transcription start site region 58714	1753 bp upstream
Tssr62983	transcription start site region 62983	1685 bp upstream
Tssr62984	transcription start site region 62984	1589 bp upstream
Tssr62985	transcription start site region 62985	1550 bp upstream
Tssr62986	transcription start site region 62986	1255 bp upstream
Tssr62987	transcription start site region 62987	1129 bp upstream
Tssr62988	transcription start site region 62988	1063 bp upstream
Tssr62989	transcription start site region 62989	903 bp upstream
Tssr62990	transcription start site region 62990	850 bp upstream
Tssr62991	transcription start site region 62991	821 bp upstream
Tssr62992	transcription start site region 62992	771 bp upstream
Tssr62993	transcription start site region 62993	678 bp upstream
Tssr62994	transcription start site region 62994	501 bp upstream
Tssr62995	transcription start site region 62995	447 bp upstream
Tssr62996	transcription start site region 62996	310 bp upstream
Tssr62997	transcription start site region 62997	244 bp upstream
Tssr62998	transcription start site region 62998	173 bp upstream
Tssr62999	transcription start site region 62999	120 bp upstream
Tssr63000	transcription start site region 63000	97 bp upstream
Tssr63001	transcription start site region 63001	81 bp upstream
Tssr63002	transcription start site region 63002	1666 bp downstream