rs13459665 SNP Detail

Summary

• ID
  rs13459665
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72539372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GATCAAGGAG CTTCCTAGCC CCTGGAGAGG CTCAGCAGGC CATCAGAGCC
  S
  CCAGAACCAG TTTGCATTGG CCCCTGCTCT CTCCCCAAGA TGGCTAGGTC           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771602	MGP_WTSI_X_70741105	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13459665					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771602	MGP_WTSI_X_70741105	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72539372 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr4565	regulatory region 4565	1772 bp distal
Rr7747	regulatory region 7747	635 bp distal
Rr10758	regulatory region 10758	1845 bp distal
Tssr5634	transcription start site region 5634	1045 bp upstream
Tssr5635	transcription start site region 5635	702 bp upstream
Tssr161228	transcription start site region 161228	1157 bp downstream
Tssr161229	transcription start site region 161229	1124 bp downstream
Tssr161230	transcription start site region 161230	1100 bp downstream
Tssr161231	transcription start site region 161231	1075 bp downstream
Tssr161232	transcription start site region 161232	1030 bp downstream
Tssr161233	transcription start site region 161233	956 bp downstream
Tssr161234	transcription start site region 161234	932 bp downstream
Tssr161235	transcription start site region 161235	850 bp downstream
Tssr161236	transcription start site region 161236	803 bp downstream
Tssr161237	transcription start site region 161237	778 bp downstream
Tssr161238	transcription start site region 161238	742 bp downstream
Tssr161239	transcription start site region 161239	691 bp downstream
Tssr161240	transcription start site region 161240	657 bp downstream
Tssr161241	transcription start site region 161241	634 bp downstream
Tssr161242	transcription start site region 161242	463 bp downstream
Tssr161243	transcription start site region 161243	434 bp downstream
Tssr161244	transcription start site region 161244	364 bp downstream
Tssr161245	transcription start site region 161245	314 bp downstream
Tssr161246	transcription start site region 161246	171 bp downstream
Tssr161247	transcription start site region 161247	136 bp downstream
Tssr161248	transcription start site region 161248	110 bp upstream
Tssr163547	transcription start site region 163547	1089 bp upstream
Tssr163548	transcription start site region 163548	1017 bp upstream
Tssr163549	transcription start site region 163549	951 bp upstream
Tssr163550	transcription start site region 163550	888 bp upstream
Tssr163551	transcription start site region 163551	730 bp upstream
Tssr163552	transcription start site region 163552	668 bp upstream
Tssr163553	transcription start site region 163553	595 bp upstream
Tssr163554	transcription start site region 163554	570 bp upstream
Tssr163555	transcription start site region 163555	472 bp upstream