rs13460160 SNP Detail

Summary

• ID
  rs13460160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85591112 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGATA TGGGGCCAGG GGCAGGAAGG
  Y
  CCCTTCAGTG TGGGCCAGGG AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148271277	ENSMUSSNP1563403	ENSEMBL	ENSEMBL_Sanger	r	SNP	A	G
ss325042858	CHEV_15_85537341	CHEVERUD	SCREENING_POP	r	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs13460160					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85591112 () rs orientation: reverse

Symbol	Name	Function Class
Gm34622	predicted gene, 34622	1960 bp downstream
Lncppara	long noncoding RNA near Ppara	within coordinates
Mirc31	microRNA cluster 31, including Mirlet7c-2 through Mirlet7b	within coordinates
Mirlet7b	microRNA let7b	408 bp upstream
Mirlet7c-2	microRNA let7c-2	214 bp downstream
Rr507292	regulatory region 507292	502 bp distal
Rr507293	regulatory region 507293	230 bp proximal
Rr507294	regulatory region 507294	1607 bp proximal