rs13460380 SNP Detail

Summary

• ID
  rs13460380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81017070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GTTCTGAGGG GCTGCTGGTG TCTAACTTCC AGCTCTTCAC AGGGCGCTCT
  Y
  TGTGAGGAAA ACATGCGTGG TGTGCGGTTT GATGTTCATG ATGTGACCCT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388442	NES15267110	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13460380					SNP	C	C	C	C	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388442	NES15267110	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81017070 () rs orientation: forward

Symbol	Name	Function Class
4930442H23Rik	RIKEN cDNA 4930442H23 gene	1369 bp downstream
Cpgi1951	CpG island 1951	1311 bp proximal
Dapk3	death-associated protein kinase 3	1769 bp upstream
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435545	regulatory region 435545	1540 bp distal
Rr435546	regulatory region 435546	1048 bp distal
Rr435547	regulatory region 435547	1279 bp proximal
Tssr3283	transcription start site region 3283	1191 bp upstream
Tssr94700	transcription start site region 94700	1887 bp downstream
Tssr94701	transcription start site region 94701	1818 bp downstream
Tssr94702	transcription start site region 94702	1653 bp downstream
Tssr94703	transcription start site region 94703	1588 bp downstream
Tssr94704	transcription start site region 94704	1562 bp downstream
Tssr94705	transcription start site region 94705	1497 bp downstream
Tssr94706	transcription start site region 94706	1329 bp downstream
Tssr94707	transcription start site region 94707	1274 bp downstream
Tssr94708	transcription start site region 94708	1218 bp downstream
Tssr94709	transcription start site region 94709	960 bp downstream
Tssr94710	transcription start site region 94710	1164 bp upstream
Tssr94711	transcription start site region 94711	1764 bp upstream
Tssr94712	transcription start site region 94712	1820 bp upstream
Tssr94713	transcription start site region 94713	1986 bp upstream
Tssr98570	transcription start site region 98570	1823 bp upstream
Tssr98571	transcription start site region 98571	1457 bp upstream