rs13460385 SNP Detail

Summary

• ID
  rs13460385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81016422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCAGGGTGCT GACCATTGTT CCCACAGTGC ATCATTGAGG AGTCTGGAGA
  R
  CATATTATTG CTGGCGCCGG TGAGCTGCAC CTGGAGATCT GCCTTAAGGA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388454	NES15267106	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13460385					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388454	NES15267106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81016422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1951	CpG island 1951	1959 bp proximal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435545	regulatory region 435545	892 bp distal
Rr435546	regulatory region 435546	400 bp distal
Rr435547	regulatory region 435547	1927 bp proximal
Snord37	small nucleolar RNA, C/D box 37	1575 bp downstream
Tssr3283	transcription start site region 3283	1839 bp upstream
Tssr94699	transcription start site region 94699	1383 bp downstream
Tssr94700	transcription start site region 94700	1239 bp downstream
Tssr94701	transcription start site region 94701	1170 bp downstream
Tssr94702	transcription start site region 94702	1005 bp downstream
Tssr94703	transcription start site region 94703	940 bp downstream
Tssr94704	transcription start site region 94704	914 bp downstream
Tssr94705	transcription start site region 94705	849 bp downstream
Tssr94706	transcription start site region 94706	681 bp downstream
Tssr94707	transcription start site region 94707	626 bp downstream
Tssr94708	transcription start site region 94708	570 bp downstream
Tssr94709	transcription start site region 94709	312 bp downstream
Tssr94710	transcription start site region 94710	1812 bp upstream
Tssr98570	transcription start site region 98570	1175 bp upstream
Tssr98571	transcription start site region 98571	809 bp upstream