rs13460569 SNP Detail

Summary

• ID
  rs13460569
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174187796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGTGGTT CTTGGGCACA
  AGGTGTGGCT GAGAGTCCCT AGCCCCTCCC ACTATGGGGA AGCCAGGGAC ATTTATTTCC
  CTCATTTTCA TAGGCAGAGA TCAAGAGTTT GGGGGTGATG AGCTACAATG GTGTCAGACT
  AGGTCTTCTA AGCTAATTAG CATAATTAAT AATTTTTTTT TTTGTAGCGA CTCCCGAGCC
  S
  GGAGAGGACC CACGCGTGAC CCGGGCCAAG TACTTCATTC GGGATGAGTT TCTGGTGAGT
  AGGACTTGTA GTCCCTTACT CCTCCTCACG AGTATTCTCC AGTCAGTGCT GGATTTGGAG
  ACTGAGCGGT CCAGGCCTTC CATTGTATTG TACTATGAGT TGATGGCTGG TCCTCTGGTG
  GTGGGGTGAG GGGCTCCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45238706	mCV23619791	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G
ss148341566	ENSMUSSNP2037484	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	G
ss320627433	CHEV_2_174171504	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs13460569					SNP	C	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174187796 () rs orientation: forward

Symbol	Name	Function Class
Gnas	GNAS complex locus	within coordinates
Rr397554	regulatory region 397554	1580 bp downstream
Rr572112	regulatory region 572112	1676 bp distal
Rr572113	regulatory region 572113	1141 bp proximal
Tssr792	transcription start site region 792	331 bp upstream
Tssr22136	transcription start site region 22136	1600 bp downstream
Tssr22137	transcription start site region 22137	552 bp downstream
Tssr22138	transcription start site region 22138	487 bp downstream
Tssr22139	transcription start site region 22139	within coordinates
Tssr22140	transcription start site region 22140	251 bp upstream
Tssr22141	transcription start site region 22141	314 bp upstream
Tssr22142	transcription start site region 22142	354 bp upstream
Tssr22143	transcription start site region 22143	449 bp upstream
Tssr22144	transcription start site region 22144	564 bp upstream
Tssr22145	transcription start site region 22145	593 bp upstream
Tssr22146	transcription start site region 22146	599 bp upstream
Tssr28013	transcription start site region 28013	874 bp upstream
Tssr28014	transcription start site region 28014	463 bp upstream