rs13460594 SNP Detail

Summary

• ID
  rs13460594
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:87866683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCACAGGCTC GGGTCTTTAA CGAAACTCCC ATCAATCCCC GGAAATGTGC
  Y
  CACATCCTCA CCAAGATCCT TTATCTCATA AACCAGGTAA CAAGATGAAC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51736702	NES14799891	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs13460594					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51736702	NES14799891	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87866683 () rs orientation: forward

Symbol	Name	Function Class
Copg1	coatomer protein complex, subunit gamma 1	within coordinates
Cpgi17684	CpG island 17684	1462 bp distal
Rr399752	regulatory region 399752	1795 bp downstream
Rr633771	regulatory region 633771	1763 bp distal
Rr633772	regulatory region 633772	1963 bp distal
Rr633773	regulatory region 633773	1786 bp distal
Rr633774	regulatory region 633774	1125 bp distal
Tssr57557	transcription start site region 57557	1685 bp downstream