rs13460801 SNP Detail

Summary

• ID
  rs13460801
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24914897 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAGGC ATAGAGACGA CACCACCCCT
  K
  CCGCGGCCCC GGCGCCGCAA GGTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325333070	CHEV_17_24832868	CHEVERUD	SCREENING_POP	r	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13460801					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24914897 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi8739	CpG island 8739	within coordinates
Gfer	growth factor, augmenter of liver regeneration	within coordinates
Noxo1	NADPH oxidase organizer 1	311 bp upstream
Rr523392	regulatory region 523392	within coordinates
Rr523393	regulatory region 523393	135 bp proximal
Rr523394	regulatory region 523394	596 bp proximal
Tssr5034	transcription start site region 5034	633 bp downstream
Tssr143060	transcription start site region 143060	353 bp upstream
Tssr143061	transcription start site region 143061	737 bp upstream
Tssr146764	transcription start site region 146764	64 bp downstream
Tssr146765	transcription start site region 146765	142 bp downstream
Tssr146766	transcription start site region 146766	198 bp downstream
Tssr146767	transcription start site region 146767	224 bp downstream
Tssr146768	transcription start site region 146768	274 bp downstream
Tssr146769	transcription start site region 146769	582 bp downstream
Tssr146770	transcription start site region 146770	618 bp downstream
Tssr146771	transcription start site region 146771	646 bp downstream