rs13460802 SNP Detail

Summary

• ID
  rs13460802
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:24914395 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACATC AAGTTTAGGG AGGACTGTCC
  R
  CAGGATCGGG AAGAATTGGG TCGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60552611	NES16570805	PERLEGEN	MM_PANEL2	r	SNP	C		C	C	C	C	C	C	C		T	C	T	T		C
ss145361465	ENSMUSSNP4765834	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C
ss325333067	CHEV_17_24832366	CHEVERUD	SCREENING_POP	r	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13460802					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552611	NES16570805	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24914395 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi8739	CpG island 8739			183 bp proximal
Gfer	growth factor, augmenter of liver regeneration			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
				Splice-Site
Noxo1	NADPH oxidase organizer 1			813 bp upstream
Rr523392	regulatory region 523392			275 bp proximal
Rr523393	regulatory region 523393			637 bp proximal
Rr523394	regulatory region 523394			1098 bp proximal
Tssr5034	transcription start site region 5034			1135 bp downstream
Tssr143060	transcription start site region 143060			855 bp upstream
Tssr143061	transcription start site region 143061			1239 bp upstream
Tssr146764	transcription start site region 146764			566 bp downstream
Tssr146765	transcription start site region 146765			644 bp downstream
Tssr146766	transcription start site region 146766			700 bp downstream
Tssr146767	transcription start site region 146767			726 bp downstream
Tssr146768	transcription start site region 146768			776 bp downstream
Tssr146769	transcription start site region 146769			1084 bp downstream
Tssr146770	transcription start site region 146770			1120 bp downstream
Tssr146771	transcription start site region 146771			1148 bp downstream