rs13461164 SNP Detail

Summary

• ID
  rs13461164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:73348924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTGACAG AAGCCCTCCC
  AGAAAACAAG CAAGGAAATG ATGACTGGTT GGGCGGGGCG GGGCCAGCGG AGAGAGAGAG
  GGACTCATTA ACGCTGCGTA GGGATCAGGA GACAACCGAC AGACGCCATC TTTGGTTCAG
  TGCGGCGGCA GTGACAGAAG CAGCGGCAGG GGCAGCAGCA GCAGCGGCAG TAGCAGCAGT
  R
  GCAATAGTAG AGGTAGTGGT AGCGGCTGCT GTGGTGAAGG AGGAGGAGCA GAGCGGACGC
  TGGTACCAAG GCCTGATCAT GGATGAGGAA TACGATGTGA TTGTGCTGGG GACAGGTCTT
  ACCGTAAGTG CCACTTCAGG CTCTCATAGC CCTGCATCAT GCCATCCCTC CCCACCCCAC
  GCCATCCCTC CCCACCCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46525450	mCV22545267	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss134206740	ENSMUSSNP3943340	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs13461164					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73348924 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6ap1	ATPase, H+ transporting, lysosomal accessory protein 1			627 bp downstream
Cpgi22795	CpG island 22795			within coordinates
Gdi1	GDP dissociation inhibitor 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr692006	regulatory region 692006			310 bp distal
Rr692007	regulatory region 692007			within coordinates
Tssr161327	transcription start site region 161327			1485 bp downstream
Tssr161328	transcription start site region 161328			1430 bp downstream
Tssr161329	transcription start site region 161329			1334 bp downstream
Tssr161330	transcription start site region 161330			1282 bp downstream
Tssr161331	transcription start site region 161331			1147 bp downstream
Tssr161332	transcription start site region 161332			1127 bp downstream
Tssr161333	transcription start site region 161333			282 bp downstream
Tssr161334	transcription start site region 161334			212 bp downstream
Tssr161335	transcription start site region 161335			40 bp downstream
Tssr161336	transcription start site region 161336			1865 bp upstream
Tssr163632	transcription start site region 163632			627 bp upstream