rs13461361 SNP Detail

Summary

• ID
  rs13461361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172332831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG TGGATCACCA CTCAGTGCCG
  Y
  GAGGACGTGG GCCAGCCCCA GCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45130892	mCV24953249	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss120011642	PARCsnp_1.19899	PARC_SEQ	INBRED	f	SNP			T	C
ss120014577	PARCsnp_1.09946	PARC_SEQ	INBRED	f	SNP			T	C
ss146193932	ENSMUSSNP4805425	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320125772	CHEV_1_174435395	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13461361					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172332831 () rs orientation: forward

Symbol	Name	Function Class
Rr29013	regulatory region 29013	1230 bp distal
Rr29014	regulatory region 29014	430 bp distal
Tagln2	transgelin 2	within coordinates
Tssr10219	transcription start site region 10219	within coordinates
Tssr10220	transcription start site region 10220	487 bp upstream
Tssr10221	transcription start site region 10221	529 bp upstream
Tssr10222	transcription start site region 10222	615 bp upstream
Tssr10223	transcription start site region 10223	962 bp upstream
Tssr10224	transcription start site region 10224	1308 bp upstream
Tssr10225	transcription start site region 10225	1347 bp upstream
Tssr10226	transcription start site region 10226	1360 bp upstream
Tssr10227	transcription start site region 10227	1401 bp upstream
Tssr10228	transcription start site region 10228	1453 bp upstream
Tssr10229	transcription start site region 10229	1503 bp upstream
Tssr10230	transcription start site region 10230	1524 bp upstream
Tssr10231	transcription start site region 10231	1587 bp upstream
Tssr10232	transcription start site region 10232	1631 bp upstream
Tssr10233	transcription start site region 10233	1662 bp upstream
Tssr10234	transcription start site region 10234	1721 bp upstream
Tssr15226	transcription start site region 15226	1588 bp downstream
Tssr15227	transcription start site region 15227	1681 bp downstream