rs13461362 SNP Detail

Summary

• ID
  rs13461362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172334375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAGAGGG CAAGAACGTG
  ATTGGGTTGC AGATGGGCAC CAACCGTGGA GCATCTCAGG CCGGCATGAC CGGCTATGGG
  ATGCCACGGC AGATCCTCTG ATCATACTCT CTCTCCTTCC CCTGCCCTCC ATGAATGGTT
  AATATATATG TATATATATG TTTTAGCAGA CATTCCCTGA GAGCCCCTGG ATTGCTGAAC
  Y
  CCCCTCTGCC AGGGTCCAGG CCAGCCTATC TTGTCACCAC TGGCAGGGCC TGATAATTGC
  CTCTCTCTCT CTCTCTCTTT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  GGGCTTACTA ATGCATTCCT TCCCCCACAA CCATCAAAAC TGGACCAACA AAAACCCTGG
  GACCAAAGTT GCCTCCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45096602	mCV24953255	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss146193944	ENSMUSSNP1535795	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss320125774	CHEV_1_174436939	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs13461362					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172334375 () rs orientation: forward

Symbol	Name	Function Class
Rr29014	regulatory region 29014	1974 bp distal
Tagln2	transgelin 2	within coordinates
Tssr10219	transcription start site region 10219	1508 bp downstream
Tssr10220	transcription start site region 10220	1037 bp downstream
Tssr10221	transcription start site region 10221	1002 bp downstream
Tssr10222	transcription start site region 10222	909 bp downstream
Tssr10223	transcription start site region 10223	541 bp downstream
Tssr10224	transcription start site region 10224	224 bp downstream
Tssr10225	transcription start site region 10225	185 bp downstream
Tssr10226	transcription start site region 10226	166 bp downstream
Tssr10227	transcription start site region 10227	104 bp downstream
Tssr10228	transcription start site region 10228	73 bp downstream
Tssr10229	transcription start site region 10229	23 bp downstream
Tssr10230	transcription start site region 10230	within coordinates
Tssr10231	transcription start site region 10231	43 bp upstream
Tssr10232	transcription start site region 10232	87 bp upstream
Tssr10233	transcription start site region 10233	118 bp upstream
Tssr10234	transcription start site region 10234	177 bp upstream
Tssr15226	transcription start site region 15226	44 bp downstream
Tssr15227	transcription start site region 15227	137 bp downstream