rs13461426 SNP Detail

Summary

• ID
  rs13461426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57398436 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTCC TAGGGCAAGA GCGTTATCAG
  Y
  GGGGGCTTGG ATGCCTTGGA ATTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss38708299	mCV23214462	ABI	CRAMUS_MOUSE	r	SNP	G	G	A	G
ss132170459	ENSMUSSNP3207946	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G		G		G
ss323682976	CHEV_11_57321112	CHEVERUD	SCREENING_POP	r	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs13461426					SNP	C	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57398436 () rs orientation: reverse

Symbol	Name	Function Class
Fam114a2	family with sequence similarity 114, member A2	within coordinates
Tssr108113	transcription start site region 108113	558 bp upstream
Tssr108114	transcription start site region 108114	504 bp upstream
Tssr108115	transcription start site region 108115	495 bp upstream
Tssr108116	transcription start site region 108116	476 bp upstream