rs13461549 SNP Detail

Summary

• ID
  rs13461549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:119800452 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGTT GGCAACTGGT GGCTCTTGAG
  R
  GCTCTTACGC CCTTCATTAG CTGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46397574	mCV24883436	ABI	CRAMUS_MOUSE	r	SNP	C	C	C					T	C
ss47797857	NES11984933	PERLEGEN	MM_PANEL2	r	SNP	C		C	C	C	C	C		C	C	T		C	T	T	C
ss137050747	ENSMUSSNP3580535	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	C						C
ss323223765	CHEV_9_119880504	CHEVERUD	SCREENING_POP	r	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs13461549					SNP	G	G	G	G	G	G	G	A	G	G	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47797857	NES11984933	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119800452 () rs orientation: reverse

Symbol	Name	Function Class
Csrnp1	cysteine-serine-rich nuclear protein 1	mRNA-UTR
Rr688588	regulatory region 688588	within coordinates
Rr688589	regulatory region 688589	447 bp distal