rs13461615 SNP Detail

Summary

• ID
  rs13461615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54969688 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTCGG CCGTGTTCTG CTGCGTGGCG
  Y
  GCCTGCAGGT CAGTGCCGTT GTGCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss16376684	06.055.045	TWGNF	TWGNF-Mouse-2	r	SNP	A	A	A	A	A	A	A	A	G	G	G	A	A	G	G	A	A	G	A	A	A	A	A	G	A	A	A	A	G	G	G	A	A	A	A	A	A	G		A	A	G	A	A	G	A	A	A	A
ss45927482	mCV24061940	ABI	CRAMUS_MOUSE	r	SNP		A	A						G											A
ss47913234	NES11653332	PERLEGEN	MM_PANEL2	r	SNP	A		A	A	A	A		A							G					A		A			A					G		A			A				G									A
ss133206763	ENSMUSSNP205030	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	A																	A
ss321805144	CHEV_6_54942697	CHEVERUD	SCREENING_POP	r	SNP																										A																		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs13461615					SNP	T	T	T	T	T	T	T	T	C	C	C	T	T	C	C	T	T	C	T	T	T	T	T	C	T	T	T	T	C	C	C	T	T	T	T	T	T	C	C	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47913234	NES11653332	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54969688 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	within coordinates
Ggct	gamma-glutamyl cyclotransferase	within coordinates
Rr366742	regulatory region 366742	379 bp upstream
Rr630884	regulatory region 630884	46 bp distal
Rr630885	regulatory region 630885	84 bp proximal
Rr630886	regulatory region 630886	237 bp proximal
Tssr61105	transcription start site region 61105	155 bp downstream
Tssr61106	transcription start site region 61106	179 bp downstream
Tssr61107	transcription start site region 61107	207 bp downstream
Tssr61108	transcription start site region 61108	222 bp downstream
Tssr61109	transcription start site region 61109	243 bp downstream