rs13461695 SNP Detail

Summary

• ID
  rs13461695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133854871 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAGAT TGTCTTAAGC CCTGACGATG
  R
  CTGTCCCCAG CCACACCTTG GGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45718353	mCV24805084	ABI	CRAMUS_MOUSE	r	SNP	C	C	T
ss321345448	CHEV_4_133683475	CHEVERUD	SCREENING_POP	r	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13461695					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133854871 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi15028	CpG island 15028	692 bp proximal
Gm68742	predicted gene, 68742	1383 bp downstream
Rr601575	regulatory region 601575	1169 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	within coordinates
Tssr39535	transcription start site region 39535	within coordinates
Tssr39536	transcription start site region 39536	58 bp upstream
Tssr39537	transcription start site region 39537	348 bp upstream
Tssr43866	transcription start site region 43866	67 bp downstream
Tssr43867	transcription start site region 43867	127 bp downstream
Tssr43868	transcription start site region 43868	163 bp downstream
Tssr43869	transcription start site region 43869	238 bp downstream
Tssr43870	transcription start site region 43870	391 bp downstream
Tssr43871	transcription start site region 43871	439 bp downstream
Tssr43872	transcription start site region 43872	469 bp downstream
Tssr43873	transcription start site region 43873	492 bp downstream
Tssr43874	transcription start site region 43874	522 bp downstream
Tssr43875	transcription start site region 43875	1120 bp downstream
Tssr43876	transcription start site region 43876	1147 bp downstream
Ubxn11	UBX domain protein 11	776 bp downstream