rs13461786 SNP Detail

Summary

• ID
  rs13461786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:147165277 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTTTG ACCTGCCCCA CGACCCAGAG
  Y
  GCTGCCGCCA AGACTAATTA GACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45956364	mCV22610057	ABI	CRAMUS_MOUSE	r	SNP	G	G	A	A
ss134013068	ENSMUSSNP3542051	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G		A
ss322086692	CHEV_6_147212301	CHEVERUD	SCREENING_POP	r	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13461786					SNP	C	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:147165277 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pthlh	parathyroid hormone-like peptide			Intron
				mRNA-UTR
Rr641498	regulatory region 641498			within coordinates
Rr641499	regulatory region 641499			358 bp proximal
Rr641500	regulatory region 641500			378 bp proximal
Tssr59618	transcription start site region 59618			319 bp upstream
Tssr64140	transcription start site region 64140			79 bp downstream
Tssr64141	transcription start site region 64141			154 bp downstream
Tssr64142	transcription start site region 64142			184 bp downstream
Tssr64143	transcription start site region 64143			203 bp downstream
Tssr64144	transcription start site region 64144			345 bp downstream