rs13461823 SNP Detail

Summary

• ID
  rs13461823
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80140477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACC TTCGAGTTAA GCACATTCCT
  S
  GAATCCAGCA AAGCCCCACA ACATG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss39345270	mCV24866661	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss148216308	ENSMUSSNP6005475	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss325030590	CHEV_15_80086706	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs13461823					SNP	G	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80140477 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	within coordinates
Cpgi7369	CpG island 7369	within coordinates
Gm56706	predicted gene, 56706	1281 bp upstream
Rr505931	regulatory region 505931	1292 bp distal
Rr505932	regulatory region 505932	1289 bp distal
Rr505933	regulatory region 505933	1082 bp distal
Rr505934	regulatory region 505934	1567 bp proximal
Tssr132199	transcription start site region 132199	1095 bp downstream
Tssr132200	transcription start site region 132200	1013 bp downstream
Tssr132201	transcription start site region 132201	955 bp downstream
Tssr132202	transcription start site region 132202	765 bp downstream
Tssr132203	transcription start site region 132203	198 bp downstream
Tssr132204	transcription start site region 132204	61 bp upstream
Tssr132205	transcription start site region 132205	628 bp upstream
Tssr132206	transcription start site region 132206	806 bp upstream
Tssr132207	transcription start site region 132207	889 bp upstream
Tssr135431	transcription start site region 135431	1276 bp upstream
Tssr135432	transcription start site region 135432	1258 bp upstream
Tssr135433	transcription start site region 135433	412 bp upstream
Tssr135434	transcription start site region 135434	1257 bp downstream