rs13461824 SNP Detail

Summary

• ID
  rs13461824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80139734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT GTCTGCCGGT TTAAGTTGTG
  Y
  GCTCGGGTGT CCCTTTCCTC TTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss39364187	mCV24866659	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss148216293	ENSMUSSNP4013048	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325030587	CHEV_15_80085963	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs13461824					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80139734 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	within coordinates
Cpgi7369	CpG island 7369	within coordinates
Gm56706	predicted gene, 56706	538 bp upstream
Rr505931	regulatory region 505931	549 bp distal
Rr505932	regulatory region 505932	546 bp distal
Rr505933	regulatory region 505933	339 bp distal
Tssr132199	transcription start site region 132199	352 bp downstream
Tssr132200	transcription start site region 132200	270 bp downstream
Tssr132201	transcription start site region 132201	212 bp downstream
Tssr132202	transcription start site region 132202	22 bp downstream
Tssr132203	transcription start site region 132203	484 bp upstream
Tssr132204	transcription start site region 132204	804 bp upstream
Tssr132205	transcription start site region 132205	1371 bp upstream
Tssr132206	transcription start site region 132206	1549 bp upstream
Tssr132207	transcription start site region 132207	1632 bp upstream
Tssr135431	transcription start site region 135431	533 bp upstream
Tssr135432	transcription start site region 135432	515 bp upstream
Tssr135433	transcription start site region 135433	312 bp downstream
Tssr135434	transcription start site region 135434	2000 bp downstream