rs13461826 SNP Detail

Summary

• ID
  rs13461826
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80141283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAC AGTGGCATCT GTATGAGCCC
  R
  GAGTCCTACC TGGGCTCTCC CCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148216312	ENSMUSSNP548432	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325030591	CHEV_15_80087512	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs13461826					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80141283 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	within coordinates
Cpgi7369	CpG island 7369	729 bp distal
Rr505933	regulatory region 505933	1888 bp distal
Rr505934	regulatory region 505934	761 bp proximal
Tssr132199	transcription start site region 132199	1901 bp downstream
Tssr132200	transcription start site region 132200	1819 bp downstream
Tssr132201	transcription start site region 132201	1761 bp downstream
Tssr132202	transcription start site region 132202	1571 bp downstream
Tssr132203	transcription start site region 132203	1004 bp downstream
Tssr132204	transcription start site region 132204	733 bp downstream
Tssr132205	transcription start site region 132205	162 bp downstream
Tssr132206	transcription start site region 132206	within coordinates
Tssr132207	transcription start site region 132207	83 bp upstream
Tssr135433	transcription start site region 135433	1218 bp upstream
Tssr135434	transcription start site region 135434	451 bp downstream