rs13461848 SNP Detail

Summary

• ID
  rs13461848
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:116743772 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCCT GTCCGGGGCG TTAGGGTCTC
  S
  GCGCCGCTTC GCAGCCATGA GCTAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323867024	CHEV_11_116714260	CHEVERUD	SCREENING_POP	r	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs13461848					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:116743772 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi4197	CpG island 4197	within coordinates
Mfsd11	major facilitator superfamily domain containing 11	within coordinates
Rr246191	regulatory region 246191	within coordinates
Rr403146	regulatory region 403146	48 bp upstream
Rr403147	regulatory region 403147	600 bp upstream
Srsf2	serine and arginine-rich splicing factor 2	within coordinates
Tssr106000	transcription start site region 106000	726 bp downstream
Tssr106001	transcription start site region 106001	372 bp downstream
Tssr106002	transcription start site region 106002	308 bp upstream
Tssr106003	transcription start site region 106003	511 bp upstream
Tssr106004	transcription start site region 106004	806 bp upstream
Tssr112001	transcription start site region 112001	1752 bp upstream
Tssr112002	transcription start site region 112002	1675 bp upstream
Tssr112003	transcription start site region 112003	1631 bp upstream
Tssr112004	transcription start site region 112004	1471 bp upstream
Tssr112005	transcription start site region 112005	793 bp upstream
Tssr112006	transcription start site region 112006	754 bp upstream
Tssr112007	transcription start site region 112007	688 bp upstream
Tssr112008	transcription start site region 112008	582 bp upstream
Tssr112009	transcription start site region 112009	490 bp upstream
Tssr112010	transcription start site region 112010	137 bp downstream