GGCCT GTCCGGGGCG TTAGGGTCTC S GCGCCGCTTC GCAGCCATGA GCTAC S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | LG/J |
SM/J |
---|---|---|---|---|---|---|---|
ss323867024 | CHEV_11_116714260 | CHEVERUD | SCREENING_POP | r | SNP | C | G |
SNP Consensus Information | |||||||
SNP | Consensus Type | LG/J |
SM/J |
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rs13461848 | SNP | G | C |
Location: Chr11:116743772 () rs orientation: reverse | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi4197 | CpG island 4197 | within coordinates | ||||||
Mfsd11 | major facilitator superfamily domain containing 11 | within coordinates | ||||||
Rr246191 | regulatory region 246191 | within coordinates | ||||||
Rr403146 | regulatory region 403146 | 48 bp upstream | ||||||
Rr403147 | regulatory region 403147 | 600 bp upstream | ||||||
Srsf2 | serine and arginine-rich splicing factor 2 | within coordinates | ||||||
Tssr106000 | transcription start site region 106000 | 726 bp downstream | ||||||
Tssr106001 | transcription start site region 106001 | 372 bp downstream | ||||||
Tssr106002 | transcription start site region 106002 | 308 bp upstream | ||||||
Tssr106003 | transcription start site region 106003 | 511 bp upstream | ||||||
Tssr106004 | transcription start site region 106004 | 806 bp upstream | ||||||
Tssr112001 | transcription start site region 112001 | 1752 bp upstream | ||||||
Tssr112002 | transcription start site region 112002 | 1675 bp upstream | ||||||
Tssr112003 | transcription start site region 112003 | 1631 bp upstream | ||||||
Tssr112004 | transcription start site region 112004 | 1471 bp upstream | ||||||
Tssr112005 | transcription start site region 112005 | 793 bp upstream | ||||||
Tssr112006 | transcription start site region 112006 | 754 bp upstream | ||||||
Tssr112007 | transcription start site region 112007 | 688 bp upstream | ||||||
Tssr112008 | transcription start site region 112008 | 582 bp upstream | ||||||
Tssr112009 | transcription start site region 112009 | 490 bp upstream | ||||||
Tssr112010 | transcription start site region 112010 | 137 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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