rs13462139 SNP Detail

Summary

• ID
  rs13462139
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46141650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCA TGCTGGAGAC GCTTAAGACC
  M
  AAGTCCAGAG TGTGATCGAC AAGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46305611	mCV24051247	ABI	CRAMUS_MOUSE	f	SNP		A	A					C		A
ss47697300	NES11321042	PERLEGEN	MM_PANEL2	f	SNP	A		A	C	A	C	A		A	A	A	A		A	A	C	A		C
ss136425002	ENSMUSSNP4485299	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							A
ss322944005	CHEV_9_46038435	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs13462139					SNP	A	A	A	C	A	C	A	C	A	A	A	A	A	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47697300	NES11321042	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46141650 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	within coordinates
Cpgi21701	CpG island 21701	within coordinates
Rr195182	regulatory region 195182	1450 bp distal
Rr195183	regulatory region 195183	650 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84839	transcription start site region 84839	1978 bp downstream
Tssr84840	transcription start site region 84840	1638 bp downstream
Tssr84841	transcription start site region 84841	1508 bp downstream
Tssr84842	transcription start site region 84842	1406 bp downstream
Tssr84843	transcription start site region 84843	1372 bp downstream
Tssr84844	transcription start site region 84844	1198 bp downstream
Tssr84845	transcription start site region 84845	1161 bp downstream
Tssr84846	transcription start site region 84846	1106 bp downstream
Tssr84847	transcription start site region 84847	444 bp downstream
Tssr84848	transcription start site region 84848	366 bp downstream
Tssr84849	transcription start site region 84849	330 bp downstream
Tssr84850	transcription start site region 84850	288 bp downstream
Tssr84851	transcription start site region 84851	253 bp downstream
Tssr84852	transcription start site region 84852	156 bp downstream
Tssr84853	transcription start site region 84853	122 bp downstream
Tssr84854	transcription start site region 84854	109 bp downstream
Tssr84855	transcription start site region 84855	89 bp downstream
Tssr84856	transcription start site region 84856	78 bp downstream
Tssr84857	transcription start site region 84857	33 bp upstream
Tssr84858	transcription start site region 84858	52 bp upstream
Tssr89313	transcription start site region 89313	377 bp upstream
Tssr89314	transcription start site region 89314	349 bp upstream
Tssr89315	transcription start site region 89315	326 bp upstream
Tssr89316	transcription start site region 89316	306 bp upstream
Tssr89317	transcription start site region 89317	297 bp upstream
Tssr89318	transcription start site region 89318	273 bp upstream
Tssr89319	transcription start site region 89319	263 bp upstream
Tssr89320	transcription start site region 89320	250 bp upstream
Tssr89321	transcription start site region 89321	225 bp upstream
Tssr89322	transcription start site region 89322	142 bp upstream
Tssr89323	transcription start site region 89323	90 bp upstream
Tssr89324	transcription start site region 89324	62 bp upstream
Tssr89325	transcription start site region 89325	37 bp upstream
Tssr89326	transcription start site region 89326	3 bp upstream
Tssr89327	transcription start site region 89327	109 bp downstream