rs13462308 SNP Detail

Summary

• ID
  rs13462308
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164265271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCC AGGAAATAAA GAAAAAAAAA
  W
  AATAATAATA AAGACCTGAT ACCAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45056717	mCV24721519	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T
ss145978556	ENSMUSSNP5243155	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
ss320086024	CHEV_1_166367833	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs13462308					SNP	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164265271 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Nme7	NME/NM23 family member 7	401 bp downstream
Tssr9784	transcription start site region 9784	773 bp upstream
Tssr14731	transcription start site region 14731	277 bp upstream
Tssr14732	transcription start site region 14732	37 bp downstream
Tssr14733	transcription start site region 14733	146 bp downstream
Tssr14734	transcription start site region 14734	174 bp downstream
Tssr14735	transcription start site region 14735	242 bp downstream
Tssr14736	transcription start site region 14736	275 bp downstream
Tssr14737	transcription start site region 14737	338 bp downstream
Tssr14738	transcription start site region 14738	473 bp downstream
Tssr14739	transcription start site region 14739	639 bp downstream
Tssr14740	transcription start site region 14740	693 bp downstream
Tssr14741	transcription start site region 14741	722 bp downstream
Tssr14742	transcription start site region 14742	829 bp downstream