rs13462501 SNP Detail

Summary

• ID
  rs13462501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118757646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTG TGCTGAAGGT GCTGGCTGGC
  R
  TCCTGAACAA CGTGGATGTC CGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45201306	mCV22545961	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147317314	ENSMUSSNP5262640	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
ss320472655	CHEV_2_118752901	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs13462501					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118757646 () rs orientation: forward

Symbol	Name	Function Class
Chst14	carbohydrate sulfotransferase 14	Coding-NonSynonymous
Cpgi12099	CpG island 12099	within coordinates
Rr563380	regulatory region 563380	641 bp distal
Rr563381	regulatory region 563381	134 bp proximal
Tssr19592	transcription start site region 19592	611 bp downstream
Tssr19593	transcription start site region 19593	590 bp downstream
Tssr19594	transcription start site region 19594	557 bp downstream