rs13462794 SNP Detail

Summary

• ID
  rs13462794
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21575258 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAACC TGACCTCGGG TATGTGACTC
  R
  TTAGCAAGAG CCCCCTTACA TCGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
ss50694209	NES13603158	PERLEGEN	MM_PANEL2	r	SNP	C		T	T	T	C	T	C	T	T	C		C		C		C
ss146182923	ENSMUSSNP5803512	ENSEMBL	ENSEMBL_Sanger	r	SNP		C	T						T					C
ss325752843	CHEV_19_21672384	CHEVERUD	SCREENING_POP	r	SNP												C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	PWD/PhJ	SM/J	WSB/EiJ
rs13462794					SNP	G	G	A	A	A	G	A	G	A	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694209	NES13603158	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21575258 () rs orientation: reverse

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	within coordinates
Gm38486	predicted gene, 38486	1692 bp upstream
Gm59243	predicted gene, 59243	within coordinates
Rr356955	regulatory region 356955	1143 bp proximal
Rr364167	regulatory region 364167	144 bp proximal